2017-08-04

More DNA testing: Ancient Greeks are still among Modern Greeks

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by Neil Godfrey

We saw recently that the DNA of ancient Canaanites is found among modern Syrians; we now have further evidence that the DNA of the ancient Mycenaeans is found among modern Greeks, too. It’s in the Nature journal:

Genetic origins of the Minoans and Mycenaeans

Here we show that Minoans and Mycenaeans were genetically similar, having at least three-quarters of their ancestry from the first Neolithic farmers of western Anatolia and the Aegean, and most of the remainder from ancient populations related to those of the Caucasus and Iran. However, the Mycenaeans differed from Minoans in deriving additional ancestry from an ultimate source related to the hunter–gatherers of eastern Europe and Siberia, introduced via a proximal source related to the inhabitants of either the Eurasian steppe or Armenia. Modern Greeks resemble the Mycenaeans, but with some additional dilution of the Early Neolithic ancestry. 

That abstract knocks out what I was taught at school about the Minoans being a distinct race from the Mycenaeans. The research overturns a few alternative theories about the origins of both peoples that have been floated over the decades.

What I find fascinating is just how many people do tend to “stay put and carry on” throughout all the historical migrations and conquerings and resettlements that we read about.

Who has the courage to test and publish the DNA research of Palestinian/West Bank bones throughout the millennia against the various populations in those regions today?


2017-07-28

Ancient Canaanites Survive Today in Modern Lebanon’s Population

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by Neil Godfrey

Skeleton of an adult whose DNA was sampled for the study (Supplied: Dr. Claude Doumet-Serhal) — the ABC site

Through the ABC news article, Canaanites survived Biblical ‘slaughter’, ancient DNA shows I was led to The American Journal of Human Genetics open access article, Continuity and Admixture in the Last Five Millennia of Levantine History from Ancient Canaanite and Present-Day Lebanese Genome Sequences, to read that the modern population of Lebanon contains the DNA of the ancient Canaanites.

The ABC article sums up for the TL;DR folk:

  • DNA reveals that modern Lebanese are direct descendants of ancient Canaanites
  • Despite tumultuous history, there has been substantial genetic continuity in the Near East across the past 3,000 to 4,000 years
  • European additions to Lebanese ancestry occurred around 3,750-2,170 years ago
  • Study also provides clues about ancient Phoenicians

Immediately I recalled Keith Whitelam’s book, Rhythms of Time, and I would suggest that the above DNA research does add support to his thesis that I discussed in 2015 at The Rhythms of Palestine’s History. (See also The Dark Resurgence of Biblical History.)

Here’s the abstract from the open access article:

The Canaanites inhabited the Levant region during the Bronze Age and established a culture that became influential in the Near East and beyond. However, the Canaanites, unlike most other ancient Near Easterners of this period, left few surviving textual records and thus their origin and relationship to ancient and present-day populations remain unclear. In this study, we sequenced five whole genomes from ∼3,700-year-old individuals from the city of Sidon, a major Canaanite city-state on the Eastern Mediterranean coast. We also sequenced the genomes of 99 individuals from present-day Lebanon to catalog modern Levantine genetic diversity. We find that a Bronze Age Canaanite-related ancestry was widespread in the region, shared among urban populations inhabiting the coast (Sidon) and inland populations (Jordan) who likely lived in farming societies or were pastoral nomads. This Canaanite-related ancestry derived from mixture between local Neolithic populations and eastern migrants genetically related to Chalcolithic Iranians. We estimate, using linkage-disequilibrium decay patterns, that admixture occurred 6,600–3,550 years ago, coinciding with recorded massive population movements in Mesopotamia during the mid-Holocene. We show that present-day Lebanese derive most of their ancestry from a Canaanite-related population, which therefore implies substantial genetic continuity in the Levant since at least the Bronze Age. In addition, we find Eurasian ancestry in the Lebanese not present in Bronze Age or earlier Levantines. We estimate that this Eurasian ancestry arrived in the Levant around 3,750–2,170 years ago during a period of successive conquests by distant populations. (The bolding is mine.)

Oh the implications, the questions……

 

 


2017-07-09

Crazy but Serious Theories of Consciousness

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by Neil Godfrey

So is consciousness like space, time, mass, an irreducible fundamental element of the universe? If so, should we be trying to discover the laws by which it operates and integrates with the rest of reality since it is a fundamental element that cannot be explained in terms of more complex parts?

Or does everything that exists, even down to photons, contain the property of consciousness to some degree? Are higher degrees of consciousness the product of higher amounts of information inputs and processing? If so, what are the ethical questions arising?

Or is it all an illusion?

Interesting questions — I was alerted to them by the following article on abc.net.au

Philosopher David Chalmers on consciousness, the hard problem and the nature of reality

A little followup told me I am in fact quite late to this party.

Anyone who can bring me up to speed with any further developments in this field please do so. (I am referring to serious scholarly research — not wacko new age or spiritual type theories.) I see also David Chalmers has a page linking to his articles. Yet more reading (sigh)!

 

 

 


2017-05-28

Mudskippers — Today’s Thailand post

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by Neil Godfrey

I got terribly distracted today while lunching at one of scores of river or canal restaurants in southern Bangkok. I was fascinated by the mudskippers just below from where I was sitting. They are common enough to the locals but to me, they set my mind imagining various ways such creatures as this could be seen as the evolutionary link between sea and land fauna.

I will have to rely upon someone else’s uploaded video for this one.

And there are some more fascinating videos following on from the one above. It was cute the way some of them would simply fall over all the time as they tried to walk on the mud. You can see that happening in the video above and in some ensuing ones. And I once let myself fall for the line that “legs” or “wings” or “eyes” etc would have to “work perfectly” the very first time or the creature would never survive. Balderdash.

And that back fin. I could not but help recalling from my childhood fascination with dinosaurs that image of the dimetrodon. For one of the first dinosaurs we know of it sure looked a rather dumb and boring thing compared with the T Rex.

 

 

 

 


2017-05-05

Crow Smarts

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by Neil Godfrey

It’s been a long time since I bought a children’s book — until today. Or at least it arrived today. I heard about it on a science show, Kids book goes inside the crow’s smart bird brain, and could not resist.

Look at this:

The New Caledonian crow shapes a hooked tool to extract grubs from logs.

And this:

The damn clever thing shapes another digging tool by tapering it so that it has a thick end for holding and a pointy end for digging into crevices.

The crows here have straight beaks, not slightly curved ones, and eyes more to the front of their heads than do other species of crow. Since these traits enable a more efficient use of tools (more difficult to work them with a curved beak and harder to get the aim right with eyes further apart) it appears that tool use has favoured the evolution of these smarter crows.

If like me you want to catch up with what the kids are reading and learning, check it out….


2017-03-10

Latest On Neanderthals — Aspirin, and Kissing a “Modern Human”?

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by Neil Godfrey

Speaking as we are on various types of humans in the evolutionary kaleidoscope here is a new Nature article on the latest research on Neanderthals — as read on ABC’s Science News:

Ancient dental plaque shows some Neanderthals ate plants and used drugs

Mushrooms were part of their diet, and meat eating (e.g. eating woolly rhinoceros) followed vegetarianism, just like pre-Flood vegetarianism of the human race and post-Flood meat-eating (kidding — about the biblical Flood myth).

But I’m amazed at what we can learn …..

What’s more, DNA analysis of the dental plaque from the El Sidrón Neanderthal teenager showed he ate plants to treat illness.

The teenager, who had a dental abscess on his jaw and evidence of microbes that cause gastro intestinal illnesses such as diarrhoea and vomiting, ate poplar bark, which contains the active ingredient in aspirin, and Penicillium, the mould that produces penicillin.

“So it is likely he would have been trying to self-medicate,” said Dr Weyrich.

And in the midst of reading about how our technologies are being used to record our personal information and accessed for spying, it seems even geneticists can snoop on the private activities of long extinct Neanderthals:

Swapping spit with humans

Neanderthals and ancient and modern humans also shared a number of microbes that can cause dental and gum diseases — although Neanderthals did not have cavities or gum disease.

The team sequenced the draft genome of one gum disease microbe, Methanovrevibacter oralis, from the 48,000 year-old El Sidrón cave teenager.

“What we find is that it looks like [the microbe] was introduced from humans about 120,000 years ago, about the same time that humans and Neanderthals started interbreeding,” Dr Weyrich said.

She said this indicated interactions between Neanderthals and humans were much more intimate than previously thought.

 


2017-03-06

Lost Tribes of Humanity

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by Neil Godfrey

Brought myself up with the latest discoveries on human origins last night with BBC doco The Lost Tribes of Humanity. It told me that everything I had been taught about Neanderthals at school was wrong, and enlightened me on how to pronounce this other type of human I’ve come across in my reading from time to time, the Denosivans, introduced me to the term “hominin”, and backed my wife’s suspicion that I probably do carry around Neanderthal DNA in my genome.

From http://www.nature.com/nrg/journal/v15/n3/abs/nrg3625.html

Neanderthals

  1. Neanderthals did leave artistic remains. The marks left on rocks were tested for various options such as side-products of cutting other things like skins on the rock surface and the eventual conclusion was that the marks were made as deliberate designs. (I learned they had no art.)
  2. Neanderthals adorned their bodies. Remains of certain bones indicate that wings were cut for feathers, not for meat. Feathers in abundance points to body decoration. (That was new.)
  3. Neanderthals buried their dead.
  4. They were not wiped out by the arrival of Homo Sapiens. The two types of human lived side by side for thousands of years, probably learning from one another.
  5. Modern humans interbred with Neanderthals. Most people of non-African origin have some Neanderthal DNA; about 1 to 2 percent on average of their DNA is Neanderthal. (I was taught the two could not interbreed.)
  6. The above fact indicates that modern humans interbred with Neanderthals very early in their trek out of Africa — probably when they first met Neanderthals in what today is the Middle East. This scenario would explain why modern humans across the globe contain Neanderthal DNA — with the exception of most Africans.
  7. Possibly up to 50% of all the Neanderthal DNA is still extant today, collectively, in modern humans. (We each contain around 1-2% of Neanderthal DNA but we don’t all contain the same DNA bits.)

Denisovans (D’nEESovins)

  • Races native to Australia and Papua New Guinea contain up to 5% of the Denisovan genome. Denisovan DNA is also found among the peoples of India, Himalayas and China. Up to 60 to 80% of Denisovan genome may be spread around in modern humans.

“The Hobbit” / Homo floresiensis

I was following the controversy surrounding these bones when they were first discovered in Indonesia and for a time was unsure if we would find we had a new type of human species or modern human inflicted with something like dwarfism. But the jury has apparently long been in by now and they definitely have been classified as a distinct variety of human.

Interestingly their small size was not the effect of being cut off on the island (animals so cut off tend to become smaller, presumably because less resources are therefore required to survive) but they were found to be small before their settlements were cut off by rising seas.

Though they have left remains indicating their human-ness their brains were the size of chimp brains. Sounds bad for a human, perhaps, but then as someone else pointed out recently on another program, we now know from our technological advances that it is not the size of a computer that matters so much as how it is organized. Even “bird-brains” can be very intelligent.

Archaic Africans

This group was new to me. We know of their past existence in Central Africa entirely from DNA samples among people of African descent — beginning in a laboratory in San Francisco of all places. They split off from the earliest human line then connected again some millennia later with the line leading to us.

So we don’t even need to dig up fossils to learn of the existence of other species or tribes of humans.

Interbreeding can have been through a range of activities, including adopting orphaned babies and raiding for mates.

My science fiction fantasy: Will we one day be able to piece together all the different bits of remaining DNA from Neanderthals and Denisovans and Archaic Africans and somehow put them together again the way Humpty was sort of reassembled — not literally in laboratories, god forbid, but on paper/digital files — and get some idea what those other branches of hominin were like compared with our pre-mongrel ancestors?

 


2017-01-03

The Australian Magpies

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by Neil Godfrey

I loved this program when it was first broadcast a few months ago and appreciated the ABC’s Radio National “re-releasing” it as a podcast. I always love watching magpies and so often notice fascinating behaviours. For some years many times I went outside to hang the washing out the same magpie would fly down and perch on the clothes line, looking intently at me as if to greet me and spend some time with me. In Australia we easily take their beautiful song for granted so I was pulled up with some surprise when an overseas tourist expressed amazement at the sound.

Anyone interested who hasn’t yet heard the program, do listen to

The colourful life of the Australian Magpie

The opening seconds is all you need to hear their sound.

Other details that fascinated me:

  • they are listening for the sounds of grubs etc beneath the grass
  • they recognize individual human faces
  • in the event of the loss of the male partner the female soon accepts another male replacement who continues to care and provide for her chicks
  • their black and white colour is no camouflage but functions as a highly visual signal for territorial purposes

 


2016-09-15

Trees really do need hugs

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by Neil Godfrey

green-man-266953_1280I kept thinking I was listening to a madman, that the interview was a practical joke, that a highly imaginative author was discussing his ideas for a fantasy movie or children’s story. Trees really do talk to each other? have feelings? memories? recognize and teach their young? learn? please don’t tell me they have brains….!!!!!

But a brain? For there to be something we would recognize as a brain, neurological processes must be involved, and for these, in addition to chemical messages, you need electrical impulses. And these are precisely what we can measure in the tree, and we’ve been able to do so since as far back as the nineteenth century. For some years now, a heated controversy has flared up among scientists. Can plants think? Are they intelligent?

In conjunction with his colleagues, FrantiSek BaluSka from the Institute of Cellular and Molecular Botany at the University of Bonn is of the opinion that brain-like structures can be found at root tips. In addition to signaling pathways, there are also numerous systems and molecules similar to those found in animals.34 When a root feels its way forward in the ground, it is aware of stimuli. The researchers measured electrical signals that led to changes in behavior after they were processed in a “transition zone.” If the root encounters toxic substances, impenetrable stones, or saturated soil, it analyzes the situation and transmits the necessary adjustments to the growing tip. The root tip changes direction as a result of this communication and steers the growing root around the critical areas.

Peter Wohlleben
Peter Wohlleben

I just said ‘Don’t tell me that.’

Right now, the majority of plant researchers are skeptical about whether such behavior points to a repository for intelligence, the faculty of memory, and emotions.

That’s a relief.

Among other things, they get worked up about carrying over findings in similar situations with animals and, at the end of the day, about how this threatens to blur the boundary between plants and animals. And so what? What would be so awful about that? The distinction between plant and animal is, after all, arbitrary and depends on the way an organism feeds itself: the former photosynthesizes and the latter eats other living beings. Finally, the only other big difference is in the amount of time it takes to process information and translate it into action. . . . .

You can listen an interview with the author, Peter Wohlleben, at The Secret Life of Trees. Since hearing that program yesterday I found that any web search on the name Peter Wohlleben will bring up a wealth of other articles, videos, what have you. His book:

trees

 

 

 


2016-09-14

Human Languages Use Similar Sounds for Common Words

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by Neil Godfrey

Amazing . . . can’t wait for further research to confirm or refute . . .

Sound–meaning association biases evidenced across thousands of languages

(or doi: 10.1073/pnas.1605782113)

Or you can read a short version on the news site where I first learned about it:

Linguistic study proves more than 6,000 languages use similar sounds for common words

Or under a title I thought most apt:

A nose by any other name would sound the same, study finds

Here’s a list of the sounds taken from the original PNAS article (symbols are described here):

signal-summary

Nor can I resist the nice map from the same article:

map

Trying to think through the significance(s) should it be confirmed. . . . .

First, a universal grammar. . . . now this?

 


2016-09-12

Bayes, Schizophrenia, Autism and Brain Chemistry

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by Neil Godfrey

A fascinating essay, even if speculative, by Scott Alexander on the brain chemistry behind Bayesian, deductive and inductive reasoning, and light it possibly sheds on conditions like schizophrenia, autism, and being stoned.

It’s Bayes All The Way Up


2016-09-02

Mountains Driving Evolution

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by Neil Godfrey

SE chart simple FINAL
Selenium abundances in the oceans over the past 550 million years. Note severe depletion of this vital trace element at three major extinction events (red triangles), suggesting this was a possible factor in these extinctions. Credit: John Long & Ross Large. From Phys.Org; Read more at: https://phys.org/news/2015-11-elementary-theory-mass-extinctions-life.html/a>

Okay, it’s a bit old, but awards have just been bestowed upon the scientists involved so it’s worth noting once again. Some fascinating science news by science reporter Natalie Whiting:

‘Eureka moment’ research into ocean selenium levels asks: Did mountains control evolution of humans?

Their research has shown that almost every major growth period or extinction in the Earth’s history correlates with a change in the amount of the trace element selenium in the ocean.

When there are high levels of selenium, there is growth; when levels fall, there are extinctions. . . .

. . .

“These three mass extinction events are put down to things like global anoxia — a lack of oxygen in the oceans causing extinctions, or cooling events, like ice age events.

“But none of these events or causes in themselves are total explanations for the widespread extinctions both in the oceans and on land in some instances.

“So our explanation of the trace element depauperation (poor development) in the oceans is a very good example of something that covers all the bases and actually gives a better explanation for some of these events.”

Then there’s header that I like:

A twist on Darwin’s theory: Did man evolve from the mountains?

The research has provided strong evidence that it is the movement of tectonic plates which releases trace elements, like selenium, into the ocean.

“So we’ve added a new dimension where you might say that really it’s plate tectonics which controls evolution. Because, indirectly, plate tectonics controls the chemistry of the ocean, and the chemistry of the ocean has a big control on evolutionary pathways,” Professor Large explained.

“That’s why I often say to people basically man came from the mountains. It’s mountain building, and the erosion of all those nutrients into the ocean, that controlled man’s evolution.”

Further, a discussion on The Conversation:

Plate tectonics may have driven the evolution of life on Earth

 


2016-06-07

Male and Female and Shemale created He them

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by Neil Godfrey

bearded dragonWhat on earth was God thinking?

When is a female a female? And when is a male a male? These are the questions that scientists continue to ponder after the latest research on an Australian lizard that reverses its sex when exposed to high incubation temperatures.

The study shows central bearded dragons (Pogona vitticeps) that are born with male chromosomes, but can lay eggs, have other strange characteristics.

Super-female bearded dragons are ‘more male than male’

“A bearded dragon can have male sex chromosomes but be a functioning female. Yet it can be more male-like in the way it looks, in its temperature and in its behaviour. They are more male-like than the actual males,” Professor Shine said.

 


2016-05-14

Our Stone Age Mulder Brains

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by Neil Godfrey

We're more Mulder than Scully
We’re more Mulder than Scully

Alternet has published an interview with the author of a book I have recently twice posted about:

How Our Stone-Age Brains Get in the Way of Smart Politics

My related posts:

A few excerpts from the interview . . . . First, on evolutionary psychology itself:

Robin Lindley: . . . . What did you learn from neuroscientists and others about why our brain tends to work this way?

Rick Shenkman: Whatever you make of Evolutionary Psychology, and many people hold it in dim regard, its main assumption seems very compelling to me and that is that our brain evolved to address the problems we faced during the Pleistocene, a two and a half million long period. See a leopard in the jungle and you jump. That’s your automatic brain at work. Your instincts. You don’t have to think about jumping, you just do. We jump out of the way because people who jumped when danger approached were more likely to survive and pass along their genes than those who didn’t.

A scientific consensus now exists that the brain works by using either System 1 or 2, as Daniel Kahneman explains in his book, Thinking Fast and Slow. System 1 is automatic thinking, System 2 is reflective. I found this fascinating. It helped explain how we respond to politics. Eventually, I came to the conclusion that we respond to politics most of the time using System 1. This insight wasn’t my own. I first encountered it watching a video lecture by the Cornell social scientist David Pizarro. It made a deep impression. Fortunately, I came across it early on in my research.

We are more Mulder than Scully . . . despite the strongest wishes of us sceptics that it be otherwise.

Robin Lindley: Our trust in leaders is often misplaced. You’re an expert in presidential history and you recount numerous examples of when presidents lied but there was little public reaction, such as when Grover “Jumbo” Cleveland failed to disclose he had cancer and Lyndon Johnson lied about the Gulf of Tonkin incident and Richard Nixon lied about Watergate. The public response was muted and you attribute that response to an innate credulity. How do you explain that?

Rick Shenkman: Human beings are basically believers as Harvard’s Daniel Gilbert has demonstrated. To borrow a line from another social psychologist, we’re more like Mulder than Sculley from the “X Files.” The reason is fairly straightforward. We couldn’t accomplish much if we went around skeptical of everything. Once we decide on a matter we are inclined to consider it settled unless a good reason comes along to make us question it. That gives our brain a chance to focus on threats and opportunities around us. Experiments with sea slugs that I cite in the book show this is a feature of the animal brain. It has to do with our habituation to information. Once we become accustomed to something we stop thinking about it. We grow bored by it. That’s our brain helping us keep focus on what’s new. It’s a survival instinct and it shows up, as I say, even in snails, as the scientist Eric Kandel proved half a century ago.

Another factor comes into play. We want to believe in our leaders. So it takes us quite a bit of time to become convinced that they aren’t all they’re cracked up to be. And once we cast a vote in favor of a leader we tend to come to their defense when attacked. That’s our partisan brain at work. We like being consistent. So if we decided that someone is a good leader we tend to dismiss any evidence to the contrary. Our brain literally shuts off the flow of electricity to neurons telling us something we don’t want to hear that might make us doubt our beliefs.

There are other factors, to be sure. I spend several chapters addressing these.

Continue reading “Our Stone Age Mulder Brains”